Dimitrios Vitsios's blog

dvitsios

@dimvitsios

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Highlighted Publications

• Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests
  DM Vitsios, E Kentepozidou, L Quintais, E Benito-Gutiérrez, …
  Nucleic Acids Research 45 (21), e177-e177 6 (2017)
• Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis
  DM Vitsios, MP Davis, S van Dongen, AJ Enright
  Nucleic Acids Research 45 (3), 1079-1090 21 (2016)
• Chimira: analysis of small RNA sequencing data and microRNA modifications
  DM Vitsios, AJ Enright
  Bioinformatics 31 (20), 3365-3367 34 (2015)
• A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis
  M Morgan, Y Kabayama, C Much, I Ivanova, M Di Giacomo, T Auchynnikava, J Monahan, DM Vitsios, … , A Enright & D O’Carroll
  Cell Research, Jan 7, (2019)
• mRNA 3’uridylation and poly (A) tail length sculpt the mammalian maternal transcriptome.
  M Morgan, C Much, M DiGiacomo, C Azzi, I Ivanova, DM Vitsios, J Pistolic, …
  Nature 548 (7667), 347-351 24 (2017)
• A MILI-independent piRNA biogenesis pathway empowers partial germline reprogramming
  L Vasiliauskaitė, D Vitsios, RV Berrens, C Carrieri, W Reik, AJ Enright, …
  Nature Structural & Molecular Biology 24 (7), 604 5 (2017)
• BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution
  FE Psomopoulos*, DM Vitsios*, S Baichoo, CA Ouzounis
  Bioinformatics 33 (9), 1418-1420 4 (2017)
• In situ functional dissection of RNA cis-regulatory elements by multiplex CRISPR-Cas9 genome engineering
  Q Wu, QRV Ferry, TA Baeumler, YS Michaels, DM Vitsios, O Habib, …
  Nature Communications 8 (1), 2109 3 (2017)
• RNA-sequencing analysis of umbilical cord plasma microRNAs from healthy newborns
  Gary P. Brennan, Dimitrios M. Vitsios, …, Catherine Mooney
  PLOS One, Dec 3, (2018) https://doi.org/10.1371/journal.pone.0207952
• Real-time urban traffic information extraction from GPS tracking of a bus fleet
  E Denaxas, S Mpollas, D Vitsios, C Zolotas, DG Bleris, GM Spanos, …
  IEEE Symposium on Computational Intelligence in Vehicles and Transportation Systems (CIVTS) Jul (2013)
• Multi-genome Core Pathway Identification through Gene Clustering
  DM Vitsios, FE Psomopoulos, PA Mitkas, CA Ouzounis
  Artificial Intelligence Applications and Innovations, 545-555 1 (2012)
• Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering
  DM Vitsios, FE Psomopoulos, PA Mitkas, CA Ouzounis
  International Journal on Artificial Intelligence Tools 24 (01), 1540003 (2015)